rs47236192 SNP Detail

Summary

• ID
  rs47236192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54623491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAACCCT TGGATATAGT
  GGGACTTTCT TTTTTTTTTT TTTTAAAGAT TTATTTATTA TTATATCTAA GTACACTGTA
  GCTGTCTTCA GACACTCCAG AAGAGGGCGT CAGATCTCCT TAAGGATGGT TGTGAGCGAC
  CATGTGGTTG CTGGGATTTG AACTCAGGAT CTTTGGAAGA GAAGTCAGTG CTCTTAACCG
  Y
  TGAGTCATCT CTCCAGCCCT AGTGGGACTT TCTAGGACCC AGTGGTATAA ATAGTGACAC
  AGAGGCTGCT GATGGGATTT AAAGCTTTGG CCTTTTACTT GGCCAGTCTC CCAGATCACT
  CATCTAACTT AACCCAGCTA TCTTTCTTGC CTACAACCTG CCACATGGCC AGTTCTATAC
  ATTAGTCTGG TCGGGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030225	ENSMUSSNP2493432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47236192					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54623491 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	203 bp upstream
Rr480227	regulatory region 480227	87 bp distal
Rr480228	regulatory region 480228	within coordinates
Rr480229	regulatory region 480229	610 bp proximal