rs47235963 SNP Detail

Summary

• ID
  rs47235963
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC CTAACTGCCA AACCCTAACA
  S
  AGATCTAGCC ATCAGCATCT CTAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133399273	ENSMUSSNP5699658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321866903	CHEV_6_94235650	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47235963					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	831 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1739 bp upstream
Rr634856	regulatory region 634856	1844 bp distal
Rr634857	regulatory region 634857	1626 bp distal
Rr634858	regulatory region 634858	1079 bp distal
Rr634859	regulatory region 634859	614 bp distal
Rr634860	regulatory region 634860	998 bp proximal
Rr634861	regulatory region 634861	1922 bp proximal
Tssr62174	transcription start site region 62174	1865 bp upstream
Tssr62175	transcription start site region 62175	1836 bp upstream
Tssr62176	transcription start site region 62176	1810 bp upstream
Tssr62177	transcription start site region 62177	1720 bp upstream