rs47235399 SNP Detail

Summary

• ID
  rs47235399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAGTC CTATTGAACA
  ATGCATATGC CTGTACTTGT GTAAGATAAA TGAAAAGAAA AAAAATTGTA GAGTAAGCCA
  GTCCACTAGG AGAGATGTAC AATTTGATTC TAAGAGAGGC AATTTTTTAT TTTCTTTCCC
  TGTATTGAAT GATATAACGA GAGAAGGGAG CCTGTGAGAA ACTGTGCTTC TTTAATAGGA
  Y
  GAAGGAGCGA CACTCTCTTT TAGAATCTAG AGAAAGTCCA CCGCTCAAAG CTGTGGTAAA
  ATTAACAATA ATTAACAAAC TATAATTATT TCCAGGCCCA CCTTCAAAAT ACATTTTATA
  TATATCAGCA TTTAATGTAC GCCACTAGAA TACTGAACAA GGGTGTCATT TGACTCATGG
  TAGCCAGTTG GGCCTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894252	NES15959625	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		C	T	C		T
ss321812345	CHEV_6_67486673	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47235399					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894252	NES15959625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	803 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1867 bp distal
Rr631669	regulatory region 631669	1424 bp distal
Rr631670	regulatory region 631670	873 bp distal
Rr631671	regulatory region 631671	603 bp distal
Rr631672	regulatory region 631672	700 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	883 bp upstream
Tssr1872	transcription start site region 1872	1898 bp upstream
Tssr61255	transcription start site region 61255	1934 bp upstream
Tssr61256	transcription start site region 61256	1453 bp upstream
Tssr61257	transcription start site region 61257	982 bp upstream
Tssr61258	transcription start site region 61258	877 bp upstream
Tssr61259	transcription start site region 61259	809 bp upstream