rs47232404 SNP Detail

Summary

• ID
  rs47232404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152632774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGTGTT TGTTGAATGA
  AAGATACACA CATACATGAG TCTCTTATAA CTGGTAGAGG AATCTCCTTC ATACTTCCTA
  TCTAAAAATC CTCTGCAAAG AAAGACACAT GGAGAGCAGG GTGGGGTTTA GTGGATGGTT
  TTTTTTTTCC TACTTCTTTA GAGACCAAAT ACTGGATTGA ATCTGGGGAA AGCTGTGCAC
  Y
  TTGGAGTGGC CAGGGACCTG GATATGTTGT GTGGTGATTG ATGGTTGTCG GGGGAGGTCT
  TGAACTTTAA GGCGGTGCTA TTCCCTCCTC AGGTCTCAGC TTCCTTCTAA CGCTTCTGCT
  TCCATAATAA TGCTTCCTGG CTCTGACGTC TTAAAGGGTT AGTGCAGAAG AAACCATTTT
  GGCTATTTTA GCAGAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136104924	ENSMUSSNP3973152	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321029233	CHEV_3_152590101	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47232404					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152632774 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1757 bp upstream
Rr587626	regulatory region 587626	591 bp distal
Rr587627	regulatory region 587627	1313 bp proximal
Rr587628	regulatory region 587628	1768 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1752 bp upstream