rs47229227 SNP Detail

Summary

• ID
  rs47229227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156487722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAATTC CCTGGATGGC
  AGCTTGGCTG CTGTTAGGTG GCATCAGCCC AGCTCCAACT TCACCCGTGT GCACTATTGT
  GTATGTATAG CTACGTGGCC TGAGTCAGTC CACTAAGGTC AGGTCTCTAG AGGAAAGGGC
  AGGGTTACTG CCAGCTGGTC AGTATCCAAA ATGCTTGCCG TGAGATAGGA GGGTCACTGG
  R
  TCACACTGGG CAATACAGCA CCTAAGAGAG TTTGCCAAGT TATAAAGCAA CTAGGTAGGA
  GAGTCGGTGC CTTGGGGAAC CATTCCGCTG TCTCTGCTTG TGGGAATGTC ATGGACAGCT
  GAGGCCACTG ACTCAGACGG GTGAATACTG TGGGAGCTGG GATCAGTCTT CATTCTGACA
  TTTCGGTTAT GTTAACAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145801483	ENSMUSSNP2079545	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47229227					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156487722 () rs orientation: forward

Symbol	Name	Function Class
Rr421219	regulatory region 421219	1026 bp distal
Rr421220	regulatory region 421220	within coordinates
Rr421221	regulatory region 421221	715 bp proximal
Rr421222	regulatory region 421222	1856 bp proximal
Tor3a	torsin family 3, member A	Intron