rs47229156 SNP Detail

Summary

• ID
  rs47229156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGGAT TGGCATCTCT
  CAAGAGTAGA GAGTGAGTGT CTGTATAACT GACGGTTGAT TGAACTTATT TCTGGGAGAA
  TGTCTGGTCA AGTCCACCAT GATTTTGCAA GCAAGCTGTT CGTTCCTGTT AGGTTGCTTT
  CCAATTACAG GACCTTCACA GACTTCTGAA AGATGTCCCT CATATACCTG GCTTGAATAT
  R
  TTTCTTTAAA AATAAAGATT ATATGATGAA GTGAACTGTG AATTTCCTAA AATTCAATGC
  TAGCATAATA ACATATACTC TTTTTATATA TGCACACATA TATATGTTAA TAATGTATGC
  CACTAAAACA TCAGGATGAT GATGATGATT TTGCTAGTGG AATGTATCTT CTCTACTGGA
  AGGAGAGTAG TGGTAAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134853005	ENSMUSSNP5048883	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47229156					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766594 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	785 bp upstream
Rr575767	regulatory region 575767	295 bp proximal
Rr575768	regulatory region 575768	796 bp proximal
Rr575769	regulatory region 575769	1671 bp proximal