rs47228279 SNP Detail

Summary

• ID
  rs47228279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG CTCATAGTAA GCTAAAGGTA
  Y
  GCCCACAGCA TCTTTAAAGC TGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss133574533	ENSMUSSNP2162281	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321917120	CHEV_6_115967409	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47228279					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994352 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	392 bp proximal
Rr637139	regulatory region 637139	670 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1220 bp downstream