rs47227750 SNP Detail

Summary

• ID
  rs47227750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGTGGG GATGGGAAGG
  ACATAATATA CAGGCACAAG CTACCGAGCC TTTTGTTGGG CCCTATTTGG CCTTGGTTTG
  GGCTCAATTT TTGAGACCCG TCATTCTCCT CCACTTGAGA ATGACTCAGC ACGACCTACC
  AACCTGATTG AGACTGCCTC TGCCTAGCTA CTGCTGATGT AGGCCCCGTG AGATAACCCC
  R
  CACCCCTCGT CATTTCACTC CATCACATAT GTCATCTCAC CCCATATCCC TACCCCCACC
  TCCTTGCCTT CTCTATATAA GCAAGTATCT AGTTTAATAA AGTGAGTTTC TGCTTTGACA
  ACACTCCTGG CCCAGGTGTG TTTGTTTGGG GCCATCAACA CTCACCATCC CACTCAGCCT
  CAGAGAGGCT GAAGTGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671183	ENSMUSSNP1113320	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47227750					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13006	CpG island 13006	1669 bp proximal
Gm64742	predicted gene, 64742	1967 bp upstream
Rr574033	regulatory region 574033	1477 bp proximal
Rr574034	regulatory region 574034	1908 bp proximal
Rr574035	regulatory region 574035	1978 bp proximal
Tssr28531	transcription start site region 28531	1966 bp upstream