rs47223660 SNP Detail

Summary

• ID
  rs47223660
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153431626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC AAGAGGTGAC ATGGGCAAAC
  W
  GGAACCTGGT CCTCTCTGGG TCCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136111716	ENSMUSSNP1404549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321031069	CHEV_3_153388953	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47223660					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153431626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13961	CpG island 13961	491 bp distal
Rr587740	regulatory region 587740	826 bp distal
Rr587741	regulatory region 587741	325 bp distal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	822 bp upstream
Tssr36240	transcription start site region 36240	810 bp upstream