rs47222220 SNP Detail

Summary

• ID
  rs47222220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129965885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTATGAA ACAGGGTCCA AGTTCATTCT TTTGCATGTA
  AACATCCAAC TATCCCAACC ATGGTCTCTT TATAGTATTT TCACAAAAAA TCTGAAAGTT
  Y
  CCCTCACAAA TATGTTTTCT TGCTAAATTC CATATTTCTT CCAGTTGGCT CTTGCACAAA
  CCGGAAACCT GGGGTTATTC ATCCAGGCTT TGAATCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135892751	ENSMUSSNP3990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47222220					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129965885 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	within coordinates
Cpgi13822	CpG island 13822	556 bp proximal
Rr585141	regulatory region 585141	569 bp proximal