rs47217840 SNP Detail

Summary

• ID
  rs47217840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG CATAGCTACT CCCCAGGTCC
  R
  CTACCATGCT CTTTCTCCAG CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133399282	ENSMUSSNP5108338	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321866906	CHEV_6_94235926	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47217840					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	1107 bp distal
Gm31661	predicted gene, 31661	within coordinates
Rr634857	regulatory region 634857	1902 bp distal
Rr634858	regulatory region 634858	1355 bp distal
Rr634859	regulatory region 634859	890 bp distal
Rr634860	regulatory region 634860	722 bp proximal
Rr634861	regulatory region 634861	1646 bp proximal
Tssr62177	transcription start site region 62177	1996 bp upstream