rs47216624 SNP Detail

Summary

• ID
  rs47216624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89234218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCGTGA AAAGGAGCCC
  TAACTTCCTT TTTCCAGCAG AATCAGCTGA CCTGTGACAT AAACATAATG AATCAGCAAG
  TTTCTATCAT GTAACACACC GTCTAGAAGC TTAAGGCTCA AAAGAACCAA GCTCTGGGCA
  TCTGGGTACA GACCTAACCC AGCTCTACCA GGCTCTCCCA TACCTTGATT AATAGATGGG
  R
  CCATTGCTCA CGCCCAGGCT CCCTAGCTGA GCCTCAGCTT CTCATCCTCC TACAATGGTT
  GGCTGGCTCA CTCCATGGCA GCCTCTGCAG ACAGCAAGTT CTTATGCATG TTTCCCAGTG
  CCCCTTGGCT AAACCAAGTC ATAAGGCCGG GCCTATTCCA AATGTGAGTA AGTAATAAAC
  CCCTTCTGGA AAAGAAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133370814	ENSMUSSNP4996782	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47216624					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89234218 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	501 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	786 bp distal
Rr634088	regulatory region 634088	956 bp proximal
Tssr62001	transcription start site region 62001	1010 bp downstream