rs47213446 SNP Detail

Summary

• ID
  rs47213446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117093844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGCTCA CATATATGCG
  TGTACACCTG TATGTGCGCG CGCGCGCACA CACACACACA CACACACACA CACACAGAAC
  TCTAAACATT TAAAGAGAAA ATTACACTTA GTTTAAACAT TACCTATATT GTATACATGT
  ATTGAAATAT GACATGATGC TCCATAACAT TGAATGGTTT TTGTGATGCA GGTTTTTAAA
  Y
  GTCATTCTTC TTTAGAACCC TGTGAGGCAG CCCCCTGGCC AACTAGGTAC CCTGAAGAAT
  ACTAGGGAGG TCATGAAGAA GGAAGTGACA GAGACAGAGG CTTCTTACAA ATTGAACATG
  GAGAGAGAGA AAAAGAAAAA TTCAATTAGC AGAAGTCTAA AATTTACATA AAAGATTCTT
  CTTCCTAAAA TACTTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60434412	NES15941412	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47213446					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60434412	NES15941412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117093844 () rs orientation: forward

Symbol	Name	Function Class
Rr583839	regulatory region 583839	700 bp proximal