rs47209908 SNP Detail

Summary

• ID
  rs47209908
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACAAAA ACATGTATCT
  CTTCTCAAAG TCAGAATTTG GAATGACTCT TCTGGAGGCT GACATGAGCT CTAAGTTTGA
  TCCCTACTAT CTCATCAAAA AAATATTTTA CAGAGCAAAC CAGACAAAAA TCCAAACATT
  ATAAAAGGTC TGCTCCTGCC GGGTATGGTG ACGCACGCCG TTAATCCCAG CACTCGGGAG
  K
  CAGAGGCAGG CGTATTTCTG AGTTCGAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC GAAAAACCAA AAAAAAAAAA AAAAAAAAAA
  AAAAAGGTCT GCTCCTTAAT TATCTTGCTT CTTGTCTTTT GCAAAGATTG GTCTTAAATA
  GCACCTGGTT TTTGAAAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135670755	ENSMUSSNP3048070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47209908					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454630 () rs orientation: forward

Symbol	Name	Function Class
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1519 bp upstream
Rr583758	regulatory region 583758	453 bp proximal
Rr583759	regulatory region 583759	1686 bp proximal
Tssr31364	transcription start site region 31364	780 bp upstream
Tssr35323	transcription start site region 35323	1640 bp upstream
Tssr35324	transcription start site region 35324	1111 bp downstream
Tssr35325	transcription start site region 35325	1289 bp downstream
Tssr35326	transcription start site region 35326	1556 bp downstream
Tssr35327	transcription start site region 35327	1573 bp downstream
Tssr35328	transcription start site region 35328	1590 bp downstream
Tssr35329	transcription start site region 35329	1609 bp downstream
Tssr35330	transcription start site region 35330	1662 bp downstream