rs47204468 SNP Detail

Summary

• ID
  rs47204468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCATA ATTTTAATCA
  CAGGTTTTGG GTTTATAAGA ATCTCTAGAA GATTCTTAAA AGCATGTTTA AGGTTTTACT
  GTTTACATTA TCTGGAACCA AAATCTTTCA CCCTACATTA TGATAAATTA TATTCTTAAC
  TAATCTAGTA CCCTTGAAAC AAAGGTGGTT CAAACTTTCC ATAATGCTGT GATAAACTGT
  Y
  CCCAGTGACT CAAGTGCAAA CAGATTTATT TCACCTCACA ATTCAAAAGC ATCCATCACA
  GCAAGACAGG GGCCCATGAA CTCGAAGTAA CAGGTCAGAA AGCAGAGAGC CATGAATGCT
  TGGGTAGCTC ACTTTCTCCC GGTTCACCCA GGCAAGGATC CCACACGAGG GAACAATGCC
  ACTGACAGAG ACCCATTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147079053	ENSMUSSNP3919952	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320429648	CHEV_2_101478000	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47204468					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468188 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	439 bp downstream
Rr561526	regulatory region 561526	1768 bp proximal