rs47201652 SNP Detail

Summary

• ID
  rs47201652
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108729991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGATT TTAACTCTGA
  ATGCATGTGT ACTGGCTGCG TCCAACTCCT TTGGGTGTCT TTCTCATCTC ATGCTCAGAT
  ATCATATTTG CATGCATGCA TTTGTTCTTA TTCATGTATT TATGTATCTA CTTGTTTGCT
  TGTCTGTTTA TTGTGAACTT GTGTGTAGTT TAGAGTTGTT GGAGTCCGTT CTCTCATCCT
  M
  CCATGGGGCT CTCAAGTCTT AACCACTGAG CCATCTTGCC AGCCTCATAC TCAGCAGCTT
  TTGGTTTGTT TGTTTGTTTG TTTGTTTGTT TTGACAGCTG TGACTTAACC AATCAGAAAT
  ATTGATTGTT ATGATCCCCT CTTTTCCATC TGAAAACATG CTAATTCACC CCAGTAAAGG
  AGCAAAAATC TCTTTGTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133508785	ENSMUSSNP5352494	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss321893993	CHEV_6_108703024	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47201652					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108729991 () rs orientation: forward

Symbol	Name	Function Class
Rr636193	regulatory region 636193	292 bp distal
Rr636194	regulatory region 636194	875 bp proximal