rs47198665 SNP Detail

Summary

• ID
  rs47198665
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95039323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC TTGGTCTAAA TAGCAGGGTT
  C
  CAGGACAGCC AGGGCTACAA ACAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135510077	ENSMUSSNP7131919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320841139	CHEV_3_94935934	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47198665					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95039323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13498	CpG island 13498			1795 bp proximal
D3Umi10	DNA segment, Chr 3, University of Michigan 10			1715 bp proximal
Rr367480	regulatory region 367480			1894 bp upstream
Rr580822	regulatory region 580822			556 bp proximal
Rr580823	regulatory region 580823			1989 bp proximal
Scnm1	sodium channel modifier 1			Intron
				Noncoding-Transcript-Variant
Tssr30498	transcription start site region 30498			572 bp downstream
Tssr34419	transcription start site region 34419			1886 bp downstream
Tssr34420	transcription start site region 34420			1924 bp downstream
Tssr34421	transcription start site region 34421			1977 bp downstream