rs47194237 SNP Detail

Summary

• ID
  rs47194237
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119493558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC CCCGTATGTA AATACCAATC
  M
  TCTTTTAAAC AGGATCTCTG CACTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147338500	ENSMUSSNP265358	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320476610	CHEV_2_119488813	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47194237					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119493558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	124 bp distal
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	256 bp upstream
Rr397235	regulatory region 397235	105 bp downstream
Rr563557	regulatory region 563557	290 bp distal
Rr563558	regulatory region 563558	within coordinates
Tssr25825	transcription start site region 25825	242 bp upstream