rs47192071 SNP Detail

Summary

• ID
  rs47192071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131194090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGA CGCCGGGTGT GGTGGCGCAC
  R
  CCTTTAATCC CAGCACTCGG GAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135904593	ENSMUSSNP2642101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320967768	CHEV_3_131151293	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47192071					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131194090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			1283 bp proximal
Gm36753	predicted gene, 36753			1987 bp upstream
Rr585350	regulatory region 585350			within coordinates
Rr585351	regulatory region 585351			1563 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			1383 bp upstream
Tssr1056	transcription start site region 1056			1676 bp upstream
Tssr31735	transcription start site region 31735			1408 bp upstream
Tssr35707	transcription start site region 35707			672 bp downstream
Tssr35708	transcription start site region 35708			706 bp downstream
Tssr35709	transcription start site region 35709			1418 bp downstream
Tssr35710	transcription start site region 35710			1434 bp downstream
Tssr35711	transcription start site region 35711			1582 bp downstream
Tssr35712	transcription start site region 35712			1608 bp downstream
Tssr35713	transcription start site region 35713			1849 bp downstream