rs47189605 SNP Detail

Summary

• ID
  rs47189605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133224024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGAGTCA AAGCAAATGG
  AACACTGGGT CTGATGACCC AACTCACCTT AAACTGCAAG AAGTCGAGTC AACTCCCACA
  TCCCAGGTGG AGGAAACAGG AGCCCTGATA AGGAAGGAAA CAGAAGCCCA GATAAGGCTC
  CTTGAATTTC TGGTCTGTGT CTGACTGGTG TGAAGTAAGG AATTTCGGGA TCCCTGGTAT
  Y
  AGAATCAACC CCCCCCCCCT TTTCTGTAAC CACGCTGGCA GGATTCTGAA ATGGGGAGAG
  TGAGTGCACC AAGGGTATGG AGAAATTTTT CTAGGGTGTC TGAAGCTGTC CAGGTGTGGG
  TGGGTGGCGT CACATTCAAA TTTACAAACC TTTCATGGTG CCTAATGGCT TGTAAGATCA
  AGTTCAGATT TGCTCACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147626258	ENSMUSSNP5264569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47189605					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133224024 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	784 bp distal
Rr565594	regulatory region 565594	882 bp distal
Rr565595	regulatory region 565595	736 bp proximal