rs47187681 SNP Detail

Summary

• ID
  rs47187681
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA GTCAAACAGT ATTTCTTGTC
  A
  ACACAGCGCT TCGTTCATCC ATATA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135572952	ENSMUSSNP5840550	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320861382	CHEV_3_104857197	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47187681					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1036 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1133 bp upstream
Rr367520	regulatory region 367520	1129 bp downstream
Rr582659	regulatory region 582659	1339 bp distal
Rr582660	regulatory region 582660	643 bp distal
Rr582661	regulatory region 582661	261 bp proximal
Tssr34913	transcription start site region 34913	1705 bp upstream
Tssr34914	transcription start site region 34914	1562 bp upstream
Tssr34915	transcription start site region 34915	1341 bp upstream
Tssr34916	transcription start site region 34916	1292 bp upstream
Tssr34917	transcription start site region 34917	1128 bp upstream
Tssr34918	transcription start site region 34918	597 bp downstream