rs47184480 SNP Detail

Summary

• ID
  rs47184480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138671055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACC AAAAGCAACT TAAGAAGGAG
  R
  GTTTTCTTGC TCGCTCGCTC GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147660997	ENSMUSSNP3024024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321378280	CHEV_4_138499659	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47184480					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138671055 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	4 bp upstream
Rr603051	regulatory region 603051	1924 bp distal
Rr603052	regulatory region 603052	1356 bp distal
Rr603053	regulatory region 603053	within coordinates
Rr603054	regulatory region 603054	164 bp proximal