rs47179686 SNP Detail

Summary

• ID
  rs47179686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150277199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGAGCG AGCCTGGGTA
  GGTGTAATAG TGGTGGACGT CCTTAGGCAA CAAGTTCCTA ATGGTCGTGT CTTTCAGAGT
  TGTAGTTTCT CCTAAGAGAA AAGACAGAGA ATGGATGAGA AAGGAGCTCT GAGCCGGGCA
  TGGTGGCGCA CACCTTTAAT CCCAGTACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT
  Y
  GAGGCCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA GGGCGATACA GAGAAACCCT
  GTCTCGAAAC AAACAAACAA ACAAACAAAC AAAAACAAAA AAAAAAAAAA AAAGAAGAAG
  AAGAAGAAAA AAGAAAAAAG AAAGGAGCTC TGCTCGACCT GGCCCCAGCA GGGACAGCTC
  TGGCTTTGCC TCAGGAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148049861	ENSMUSSNP5538833	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47179686					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150277199 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			1280 bp proximal
Rr605220	regulatory region 605220			1370 bp proximal
Tssr44724	transcription start site region 44724			226 bp upstream
Tssr44725	transcription start site region 44725			184 bp upstream
Tssr44726	transcription start site region 44726			157 bp upstream
Tssr44727	transcription start site region 44727			109 bp upstream
Tssr44728	transcription start site region 44728			1016 bp downstream