rs47175222 SNP Detail

Summary

• ID
  rs47175222
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59852086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGTGATTTT GCTGGTATTT CCTCAGATGA AGTGATGAGA
  GGAGAGCCAT ACTTGAGCTT TATGAATACA TGGCTTGGGT TGAGCCCAGA ACGTTTTTAT
  S
  TAACTATCCC TAGGCCTAGA AGCTTCTAGC CTCTATACAA TCTAAACTTC TGCAAGCCTG
  GACCTTGAAG GCTTCCCCTT CCAGCCTCTG TCTGCTATCG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403657	ENSMUSSNP928187	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47175222					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59852086 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	913 bp downstream
Rr593160	regulatory region 593160	1391 bp distal
Rr593161	regulatory region 593161	1649 bp distal
Rr593162	regulatory region 593162	436 bp distal
Snx30	sorting nexin family member 30	Intron