rs47172955 SNP Detail

Summary

• ID
  rs47172955
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58962885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGCGAAG GAGAAACAGT
  GGCCCCCTTT TCATGGTGAG TTATTTCTGA TGTCACTCGG GCATTCGGAC TGCAAAAAAT
  AAGCCCCTCG AAACACATCG TTGACAGTCT GGTTTCTTAT CTAGCCAAAC AGCTTACTTC
  CAGCTTGAAT TCTCGAAGAG ACCACAGGCT AACTTTATAG ATTCTGGAGA CAGGCTTCAA
  S
  CTAGAACTGT CTCCATATTT TCAGTGTTCT TTAGATCTCA TTTCTCACAA GGACACGGGT
  GGGAATCAGG AACTTTGCAG GCTCAGTTCT CTTCTTTGAC TTTTTCATGG GTTCTGGGAC
  CAGGTTTAGC TCACCAGGCT TGGGTGGCAA GTTCCTCAGC CCACTGAGCA ATCTTGCTCA
  TTCTGTTATT GTTAATATAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss60415561	NES15911319	PERLEGEN	MM_PANEL2	f	SNP		G	G	C		G	C
ss135211454	ENSMUSSNP2651077	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs47172955					SNP	G	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415561	NES15911319	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58962885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577300	regulatory region 577300			301 bp distal