rs47172464 SNP Detail

Summary

• ID
  rs47172464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AAGCCAGCAG GCTGTCCTGT
  R
  GAGCAAAGCT TAAACCAGAA ACAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147543351	ENSMUSSNP1106849	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321351520	CHEV_4_134830867	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47172464					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1329 bp distal
Rr398589	regulatory region 398589	1761 bp downstream
Rr601980	regulatory region 601980	1648 bp distal
Rr601981	regulatory region 601981	1823 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1862 bp proximal