rs47172302 SNP Detail

Summary

• ID
  rs47172302
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143869289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAACGA AGTAAAGCAA
  AGCCGATTCT TCTGGGACAA GGTAAAGGTT TGACTCTTCT TGTTTACACA AGAAAGCCTC
  CAAGGAAACC GTCCAAACTT CAGCTTCAGC TTGGAAGGTA GGCTCGGTCT CCCACTGAAG
  GTGATGCTAG GGTTGTTAAG ACAGATCAGC AGAAACCACC AAACCTAACA ACGTGAGTTC
  G
  ATTCCCAGAC CCCACTTGGT GGTTAGTGGA TGAAGAGAAA CAACCCTTGC AGGCTGTCCT
  CTGACCTCCA CATACATGCT ACGGTTTCTG TGTGTGCAGA GACAGAGAAG GAGAAAGAAA
  GGCAAAGACA GAGAAAAGGG AGGAGGAATA AATAAATAAA TATTTTAAAA AATATTTTCT
  TTATTACCCA CAACCCATGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136029073	ENSMUSSNP3631445	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47172302					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143869289 () rs orientation: forward

Symbol	Name	Function Class
Gm34162	predicted gene, 34162	within coordinates
Rr586589	regulatory region 586589	1881 bp distal
Rr586590	regulatory region 586590	327 bp proximal
Rr586591	regulatory region 586591	1211 bp proximal