rs47170446 SNP Detail

Summary

• ID
  rs47170446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84217751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGGAATC TTCCCATAGT GTGTCCTACC CAAAACAAAA
  CCTATCCGGA AGAAACAAAC GCAGCACTTC CCAACGCCCC ACCCCCACCC CCTTTCAACC
  M
  AGGCATCCAG GGAAAAGTCT GTTCACCCAA GCACGGTTTG CTCCAAGTGA AAAAAAAAAT
  CAAAACAGAA AATACAACTT GTTTGTAAAC ACTTAAACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146830318	ENSMUSSNP3373305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320371272	CHEV_2_84227564	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47170446					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84217751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			159 bp upstream
Rr560244	regulatory region 560244			1814 bp distal
Rr560245	regulatory region 560245			within coordinates
Rr560246	regulatory region 560246			170 bp proximal
Rr560247	regulatory region 560247			678 bp proximal
Tssr24971	transcription start site region 24971			215 bp upstream