rs47166302 SNP Detail

Summary

• ID
  rs47166302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCAAGT GCTGGGATTA
  AAGGCGTGCA CCACCACTGC CTGGCTCTGA ATCAACTCTT AAAGGAGACA GTAAGATGTG
  TCTCTACCCA GGGCCAGAAG TAGAACTAAG ATTTCCATTT TACTTGAGGA AGTAGCCTTC
  TCTTCATTAG CCTAAACAAA GCCCTGGTAC TTCCTTTTTG TTTTTTTTTT GTTTTTTTTT
  Y
  TTTTCTTTTC TTCATATCGT ATAAAGGGGC ATTTGTAGAG CTTCCCTGTC TAGTGTTACC
  AGGAAACAGG AGGTGTGGTT GATTCACTGT GGCCTCCAGG GCTACTTCTG TATCAAAGGC
  CACCTGAACT CAAATTCTCA GGCCATGCGC ATTCATATTG GCTCAGGGTA AATTTGTCTT
  AAGTTTTTCG TTTGTTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss354425569	MGP_WTSI_2_71704136	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs47166302					SNP	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354425569	MGP_WTSI_2_71704136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696423 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	796 bp downstream
Rr370575	regulatory region 370575	462 bp upstream
Rr558852	regulatory region 558852	within coordinates
Rr558853	regulatory region 558853	321 bp proximal
Rr558854	regulatory region 558854	1463 bp proximal
Tssr18292	transcription start site region 18292	48 bp upstream
Tssr18293	transcription start site region 18293	1675 bp upstream
Tssr24499	transcription start site region 24499	1472 bp downstream