rs47163742 SNP Detail

Summary

• ID
  rs47163742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133481702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTAAGA GATATGCTAT
  AGTTTGTCAT TGTTCCCTTA ATTTGCATTT CATTAATCAC CCATTAATGA CACTGAGATA
  TTTTTAATTG TTTACTTGTA CCCCACATAC TTTCTTTGGG CATTTATAGC CTGTTATAAT
  TTTCTCATAC ACACACACAC ACACACACAC ACACACACAC ACACGATTTG CAAATGTTTT
  W
  AAAGTCTGTG CATTCTTCTT TTCCCCTCAA TATTATTTTT GAGTGAGAAT TTTGACTTTG
  GTGGGCTATG TCCCATCAGT TTATTATCAT ACAGATTGTG CTTTCAGTGC AGTGCTTTCA
  TCTTTGTTTA ACCCGATCAT CCATCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCGTT
  GTCCTCTTTA TTTTTCTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084041	NES16591980	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47163742					SNP	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084041	NES16591980	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133481702 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	155 bp proximal