rs47159407 SNP Detail

Summary

• ID
  rs47159407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138016546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCTTACT CTCACACCAG AGAGCGGAAG TCCTGTCAAA
  GCCAAACGGG TTCAACTCCC AGGGGCATTT GTGACCTTGC CTTTCAGCGT GCATCCCTTC
  Y
  AAGGTTCCTG TGAGCCAAAC ACTTTGTTTT TTCCCCTAAG TTTATTGCTG CTGGGAACAA
  CTTGACTAAA CTTGACAGAA ACCCAGTCCC GGAAATCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135951266	ENSMUSSNP1926672	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320979287	CHEV_3_137973749	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47159407					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138016546 () rs orientation: forward

Symbol	Name	Function Class
Rr586123	regulatory region 586123	426 bp proximal