rs47152896 SNP Detail

Summary

• ID
  rs47152896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATGTGACC TCTGTGAAAG AGTCTTTAGG CCCCCTCACC
  CCCACCCCCC AAGGGGGTTG TAACCCACTT ACCTGCCGGG GGCATGGTGG CACATGCCTT
  Y
  AATCCCAGCA CTCGGGAGGC AGAGGCAGGA GGATTTCTGA GTTCAAGAAC AGCCTGGTCT
  ACAAAGTGAG CTCCAGGACA GCCAGGGCTA CAAGAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741285	ENSMUSSNP2189920	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320911466	CHEV_3_122121517	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47152896					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212248 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1158 bp upstream
Cpgi13768	CpG island 13768	954 bp proximal
Rr397985	regulatory region 397985	982 bp upstream
Rr584325	regulatory region 584325	212 bp proximal
Rr584326	regulatory region 584326	742 bp proximal
Rr584327	regulatory region 584327	1190 bp proximal
Tssr31494	transcription start site region 31494	1140 bp upstream
Tssr31495	transcription start site region 31495	1173 bp upstream
Tssr31496	transcription start site region 31496	1194 bp upstream
Tssr31497	transcription start site region 31497	1267 bp upstream
Tssr31498	transcription start site region 31498	1386 bp upstream