rs47152806 SNP Detail

Summary

• ID
  rs47152806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148021592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCACTTAATT CAACTTTCCG CTCCCTGGAA GGAAATCAGA
  AAGTAGTCAA GGAAATTGCA GCGGTTAATT ATGGGATGGA TGTGTGTGTG TGTGGTGATG
  R
  TGGGGGGGGG GTATTAGATG GATGGATAAG TGGGTGTGTA AGTGGGTGAG TGAGTGGATG
  GTTGGATGGC GGTATAGGTG GATGGATGGG TAAGTGGCTG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147987409	ENSMUSSNP1235581	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47152806					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148021592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15284	CpG island 15284	166 bp distal
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	368 bp upstream
Rr377387	regulatory region 377387	142 bp upstream
Rr604526	regulatory region 604526	within coordinates
Rr604527	regulatory region 604527	267 bp proximal
Rr604528	regulatory region 604528	922 bp proximal
Tssr40234	transcription start site region 40234	283 bp downstream
Tssr44566	transcription start site region 44566	402 bp upstream
Tssr44567	transcription start site region 44567	367 bp upstream