rs47147316 SNP Detail

Summary

• ID
  rs47147316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:45331425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGCGTA CCTTGCGGGC
  GGGGTGGGGG GTGGGAGGGG AGGGCAGTAT AGGGGGAGGG GTGGTACCAT TCCTTCCCTT
  CGGTTGCTGT AGCGTTACTC CTGGGTCATT CATTACCGGG AAGCCTCTAG GGAGTCATTC
  TAGTCTTTGG CTTAAACGGC TCCTCCGGAA AATAAACAAC CTATTCCTTG CGGGCAGCAC
  R
  TTGATAAGTA TTAAAACGTA TTCTTCGATA TTTATCCTTG AAGGACAGGC ATTCAGCGGG
  CTCTCCCAGC AGCGGAGAGT TCGTTCCCGC CGCCTTATAA CTTCCCGGGA ACTGGGCGTG
  TGGATACCCG TGGCTAGTCA GGCGCGCGGC TCAGAATCCC CGGACTGCTC CCCAGGGATT
  CGCACCGAAC TCAGCTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357774819	MGP_WTSI_3_45180912	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	A	A	G	A	G	G	G	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs47147316					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	A	A	G	A	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357774819	MGP_WTSI_3_45180912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45331425 () rs orientation: forward

Symbol	Name	Function Class
2610316D01Rik	RIKEN cDNA 2610316D01 gene	within coordinates
Cpgi13121	CpG island 13121	692 bp distal
Cpgi13122	CpG island 13122	within coordinates
Cpgi13123	CpG island 13123	925 bp proximal
Pcdh10	protocadherin 10	1408 bp upstream
Rr576050	regulatory region 576050	1219 bp distal
Rr576051	regulatory region 576051	1025 bp distal
Rr576052	regulatory region 576052	1219 bp proximal
Rr576053	regulatory region 576053	1363 bp proximal
Rr576054	regulatory region 576054	1448 bp proximal
Rr576055	regulatory region 576055	1825 bp proximal
Tssr29009	transcription start site region 29009	1406 bp upstream
Tssr33087	transcription start site region 33087	974 bp upstream
Tssr33088	transcription start site region 33088	1216 bp downstream
Tssr33089	transcription start site region 33089	1259 bp downstream