rs47146244 SNP Detail

Summary

• ID
  rs47146244
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGGATG AATGAATTAG
  CTACCTGTGG CAACCAAAGA GCCTTAAAAG CTAGCCTTAA AACCAGATGT GCAAGCCCTC
  TCTCAAGGAT AGCCCTGGCA CTCTTGAGGC AGGAGGATTA GGAGTTCAAG GCCATCCTAG
  GCTACTTTGA TGACTTTGGG GCCAGTCTGG GCTACCTGAA ACGATATTAC AAACAAACAA
  M
  AAACAGAGTT ATTTGCTGAT CGTGCCAGGA GATGAGGACT ACTAGAAACT GGGCAAAAGG
  GAGATAAGAT GGTGTTGTCC CCCTGAACAT GCCTTGAGAG CCTGAGGGCT GAATCACTCC
  TTAGCAAGTT ACCTAACCTG AGAAGACAGA GAGAGCTGTG ACTCAAGTCT GAGGAAGGCG
  ATGAGAGGTT TCTGGAAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477929	ENSMUSSNP5909737	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321336232	CHEV_4_132313607	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47146244					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	361 bp distal
Gm70165	predicted gene, 70165	510 bp upstream
Rr601063	regulatory region 601063	451 bp distal
Rr601064	regulatory region 601064	177 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	445 bp upstream
Tssr43702	transcription start site region 43702	585 bp upstream
Tssr43703	transcription start site region 43703	540 bp upstream
Tssr43704	transcription start site region 43704	505 bp upstream
Tssr43705	transcription start site region 43705	452 bp upstream
Tssr43706	transcription start site region 43706	433 bp upstream