rs47145107 SNP Detail

Summary

• ID
  rs47145107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170824469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCAGGT GAAGGATTAC CACCAATGAT CACTGTCTAG
  GGATTAATAA AGCTTTTCAA GGTTGAGGCA TAGGAGTGAG CTGGTCTGCT GGTCTGCTTT
  Y
  CAAGGGCTGG ACTCTGGCAG GCTTCCTTCC CCCAGAGCTT GGCAGCAGTG AACAGTGCCC
  TCTAGTGTCC TTATGCAGGC CTCTGAAATT GGTACCCTAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss60345144	NES15844860	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs47145107					SNP	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345144	NES15844860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170824469 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	793 bp upstream
Rr396545	regulatory region 396545	1531 bp upstream
Rr423178	regulatory region 423178	within coordinates
Rr423179	regulatory region 423179	52 bp proximal
Rr423180	regulatory region 423180	931 bp proximal
Tssr9941	transcription start site region 9941	1665 bp upstream