rs47144081 SNP Detail

Summary

• ID
  rs47144081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106017134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCAGGG CTTTTAACCA
  CTGAGCCTTT TCTCCAGCCT TGTAACTTTT TTAAATTATT GTGTGTGTAT GTGTTGTGTT
  GGAAGGGGAA GTTAGGACAT AGTAAATGCA TGCCATTGTG TGCATGTGGG GGTCAGAGAA
  TAACTTGGCT AATTCAGTTC TAGTCTTCCA CCATGGGTTC CAGGGATTGA ATTTCAGGTC
  R
  TGGGGCTTCA CAGCAAGTGC TTCTTACCTG CTGAGCCATT TCCTCGGCCC TTATAGCCTT
  CTCTTTTAAC TTGTCAATGA ATTGTGAGCG TGCTTTTTTT TTTTTTTTAG CAATAAATGT
  GTTTCTACAG CAAGCCAAAT GATTGCATAA TATTCCACTG CATAAGTTTG GCTAAACGTA
  TATCAACAAT CTAGACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147164076	ENSMUSSNP2673629	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321245446	CHEV_4_105832542	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47144081					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106017134 () rs orientation: forward

Symbol	Name	Function Class
Gm12729	predicted gene 12729	within coordinates
Rr596692	regulatory region 596692	1591 bp proximal
Rr596693	regulatory region 596693	1849 bp proximal