rs47142249 SNP Detail

Summary

• ID
  rs47142249
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141171537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGCACTT GCTGGGAGTA
  TGGCAGGAGA TACTTAACCA CAAATCCAGG ATATGTAAGA GAAAAACAAG ATGTTATCAG
  AGTGTGTTCA GCTGTGGTGG GCTTCTTGCA AAAACATCAT GGTAGGAAAA CAAGTCTCTT
  GTCAGGGTGG AAAAGTACCA ACTTGTAAGT AAATAGCCCG AGATGGCTGC AGAGATGACA
  K
  CCGCTTTCTG CTAGGAGTCG GCTCCCAACA GGCCACTGAG TAATTTATTT ACCCAGTCCG
  AGTTGCTGGG TTTGATCCCT AATACAACAA ACAAACAAAT AAATAAAATT ACCAAAACCA
  TAAAGGGAGT CACAAGTAGG TCCACATCTT TCCTTTGTCA CAAAGATGTT TGAGTAATCC
  TTTTGCACCT AAGTTTTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737251	ENSMUSSNP4271163	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47142249					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141171537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	255 bp proximal
Gm42337	predicted gene, 42337	mRNA-UTR
Rr603768	regulatory region 603768	within coordinates
Rr603769	regulatory region 603769	439 bp proximal
Rr603770	regulatory region 603770	879 bp proximal
Tssr40079	transcription start site region 40079	431 bp upstream
Tssr44320	transcription start site region 44320	1203 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	447 bp upstream