rs47130839 SNP Detail

Summary

• ID
  rs47130839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151910894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAGGAT GCACAGAGTG
  ACTCATGATT TCACTGACAT CTATGACTAA GAGTATTTTT GCGAGGGTGG CATCTTTATT
  GTTTAATAGG CCTGCCCAGC TCTTTTATGG GATTGAAAAA CTCAAGAATT ACTGCATACC
  TACTATAGGT CAATCCTCAA ATCAATATCA AGTTCAAGGT CAACCTGGGC CACACAAGAT
  Y
  CTGTCTTGAA AAGAAGAAAT AAAATGAAGA CAAAGACTAC ATTTGATTCT GAGGAAGTTT
  GTATATCCTT AGTTGCTACA ACTAGAAATG ACTATGATAA TCGTAGAAAA ACAGTAGCTT
  CAAAGTCTTT GTGTAAAAAG TTTAATTCCA GTTTTCTCTC AAGTATGTAT CTCTTTAAAT
  ATATTTTCAA AATGAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136101342	ENSMUSSNP152271	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028391	CHEV_3_151868221	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47130839					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151910894 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			1058 bp downstream
Rr587489	regulatory region 587489			973 bp distal
Rr587490	regulatory region 587490			375 bp distal