rs47128794 SNP Detail

Summary

• ID
  rs47128794
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130741342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGATGTCC TGTGGACAGA GACAACCAAA GTGGTTCTCA
  TCACTCTCTC ACTGTGTAGC TAGCTCATGA ACATGTTAGG TTTAATCTTA CAATTCTTAA
  K
  GACACATCCT TCCTTCATTA TTAGAACAAT TTTTCTAGCA TTGAATGTTA GCATAGGATA
  ACCCTGGGCT GCTTCTGCCC AGCCATGGAA TGAACTGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135902628	ENSMUSSNP113064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47128794					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130741342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	1320 bp distal
Gm65596	predicted gene, 65596	301 bp upstream
Rr585244	regulatory region 585244	312 bp distal
Rr585245	regulatory region 585245	4 bp distal
Tssr35670	transcription start site region 35670	354 bp upstream