rs47127900 SNP Detail

Summary

• ID
  rs47127900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136023496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGAGTT TGAACTTCAG
  TTCCAAAGCA CAGGCAAAAC CCTCTGCCAG CTCAGCATCT TAAGTGGCCA GAAAGGAGTT
  AAAACGTTAA CTCACCAGAA GTTTAACAGG GAATCTCCGG TGTGCGTGTT TCGGATGTTA
  CTGTCTCTGC AGCGTTCCTG GCAAAGCAAA CTTGCTCAGG CGTGAACTGT CCTCCAGCAG
  Y
  GGAGGGGTGC AGAGGGAGCT CAGAGCTGTT TCCAGGCTGG TAGGGCTCCA GGGAGGACAC
  CAACCTGCTT ATCTGCTAAC TGGCTCTCCG GTGTGTCTGA AGCTCCAGCT TCCACACCCT
  AGAGGAAACA GGCCCTTAGG AGGCTTGTGT TAGAACTCTC TAGGAGCCTC CAATTCCACC
  TGCGCTCATG TGTGCATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147564887	ENSMUSSNP4488209	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47127900					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136023496 () rs orientation: forward

Symbol	Name	Function Class
Rr602345	regulatory region 602345	639 bp proximal