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rs47127900 SNP Detail
Summary
  • ID
    rs47127900
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:136023496 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGGGAGTT TGAACTTCAG
    TTCCAAAGCA CAGGCAAAAC CCTCTGCCAG CTCAGCATCT TAAGTGGCCA GAAAGGAGTT
    AAAACGTTAA CTCACCAGAA GTTTAACAGG GAATCTCCGG TGTGCGTGTT TCGGATGTTA
    CTGTCTCTGC AGCGTTCCTG GCAAAGCAAA CTTGCTCAGG CGTGAACTGT CCTCCAGCAG
    Y
    GGAGGGGTGC AGAGGGAGCT CAGAGCTGTT TCCAGGCTGG TAGGGCTCCA GGGAGGACAC
    CAACCTGCTT ATCTGCTAAC TGGCTCTCCG GTGTGTCTGA AGCTCCAGCT TCCACACCCT
    AGAGGAAACA GGCCCTTAGG AGGCTTGTGT TAGAACTCTC TAGGAGCCTC CAATTCCACC
    TGCGCTCATG TGTGCATACC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss147564887 ENSMUSSNP4488209 ENSEMBL ENSEMBL_Sanger f SNP C T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs47127900 SNP C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136023496 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr602345 regulatory region 602345 639 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory