rs47122279 SNP Detail

Summary

• ID
  rs47122279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACGAGC TCAATTATGC
  ACGAAAGAAA CGTGAATGAC TTTCGCGCTC TACAAGAAGC TGAATTCCTC TCTAGCAGCT
  GAAGCAGGGC AGGATGTAAT AAGAAACCAG ATGGTAGGAA GCAGTACCAG CAGCACCACC
  CTGGGAAGAA AGTGCCTGTT TAAATACCAA GGCTTTTGTC TCTTAATTGA TCTGGAAGCG
  R
  CACTTAAAAA TACAGCACAC TTCCTGAATA AATGCAGCCA ATATTAATGA CAAACACGGA
  GAAGAGTCAC ACATAGAGCC GTACAGGAGA CAGACCCCAG AGCTCCACAG GTTGTTATTG
  AGAGAGTATG TCCATCAAGT GATGCTGGAA TCGTGCTTAT TCATCTTCTC CTAGCAACTC
  TACACAGTGG GTAACTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146789731	ENSMUSSNP795281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47122279					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			153 bp distal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr560061	regulatory region 560061			within coordinates
Rr560062	regulatory region 560062			47 bp proximal
Tssr24917	transcription start site region 24917			405 bp upstream
Tssr24918	transcription start site region 24918			378 bp upstream
Tssr24919	transcription start site region 24919			263 bp upstream
Tssr24920	transcription start site region 24920			228 bp upstream
Tssr24921	transcription start site region 24921			209 bp upstream
Tssr24922	transcription start site region 24922			158 bp upstream
Tssr24923	transcription start site region 24923			123 bp upstream
Tssr24924	transcription start site region 24924			97 bp upstream
Tssr24925	transcription start site region 24925			134 bp downstream