rs47120949 SNP Detail

Summary

• ID
  rs47120949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31936712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC ACAGCCTCCA CAGGCCATGC
  K
  TCCTGAGCTT CAGCAGACAA GGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60384309	NES15886331	PERLEGEN	MM_PANEL2	f	SNP			T	G	T	T		G			G	T		G
ss134741573	ENSMUSSNP328588	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T			T
ss320695694	CHEV_3_31781485	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47120949					SNP	T	T	T	G	T	T	T	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384309	NES15886331	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31936712 () rs orientation: forward

Symbol	Name	Function Class
Rr574924	regulatory region 574924	within coordinates