rs47118317 SNP Detail

Summary

• ID
  rs47118317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126456575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAATGG TAGTTTAACC
  AGGTTTTTAG CCATGGTATG TGTGGCTCTG TTTGTTTATT TGTTTTTATT TGTTTGGTTG
  TTTTGCTACT CAATTTATTA TCATCTATTA AATGGAGTAA ACTCTAGAAA CAATTTGAGA
  TGAGAGGTGT ACCTTGTCAA GAGCCTGAAT TGTCCTGTGC TTAGCGGGAC TTAGGATGCC
  Y
  GTGCCATTTA TTGTATTTGG ATTGAAAATG AAGAATATAA AGATTTTTAG ATTTTTTAAA
  ATCTTGTATA CTGCAGTATC ATATATGATA AGACGATTGC AAAAGAAAGA GAAATAGCTT
  AAGCCGATGT GTCACTATCA GTAAAACGAG CACTTAGTTA ACAGGAACCT GAAAACTCCT
  GAGTCTTCCA GTATTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838353	ENSMUSSNP6855999	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320947097	CHEV_3_126365844	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47118317					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126456575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			within coordinates
Rr397996	regulatory region 397996			711 bp downstream
Rr584671	regulatory region 584671			1334 bp distal
Rr584672	regulatory region 584672			558 bp distal
Rr584673	regulatory region 584673			329 bp proximal