rs47115859 SNP Detail

Summary

• ID
  rs47115859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121218317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCACTACT CACTCCCAGC AGCGAGTTAA ATTTCCATCG
  TTGTGACTGC TGCCACTATC AACTGGCAGT ATCATTTCAC ATTACGAACC TTTGAAACTC
  K
  GTAGTCCTTA AAGACAACCC TGTTAAGTAC TAGAAACCAC GCCTTTGATG ACAGAACTGA
  ATAACGCCCC CATGCATTCT ACCAAGTACG ATTTAGGCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135720481	ENSMUSSNP3044782	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47115859					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121218317 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	1873 bp upstream
Cpgi13758	CpG island 13758	1288 bp proximal
Gm42928	predicted gene 42928	within coordinates
Rr375667	regulatory region 375667	1661 bp downstream
Rr397975	regulatory region 397975	1649 bp upstream
Rr584073	regulatory region 584073	1339 bp proximal
Tssr31441	transcription start site region 31441	1827 bp upstream
Tssr31442	transcription start site region 31442	1900 bp upstream