rs47102573 SNP Detail

Summary

• ID
  rs47102573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3446025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCTGTT ACTCTTTTAA
  TGTGACAGTT TCATTGGGAT ACAAGTCATA TGCCATAAAA TTACCTTAAA ACTATACTGC
  TCAGTGACTT TTGTATCAGT GGGCAGATGT AGAGCAAAAC CATTGAGCCT TGTTGGGTAT
  CTGCAGTAAG GGTGTGTGTT GCTTACAGGG GTGGGTATGG TAGTTACTGG ATCACTGTGA
  Y
  CTTCATTATG CAATCCATGG AACTGTTAAC TGAATTTTGG GAAGGACAGG GACTTGTGGG
  CATGGCTCTG TTCTGCAGTG GTTGCCTGGC AAGTATAGGC TGTGTGTTCT ATCCTTCTAG
  CCAGAGGAGA AAGGAGAGGG GCAGATGGGA GGCTGGAAGG TGGAGATCCT TCTATACTTC
  TGCTAGACAT TTAGAATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61077151	NES16044637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47102573					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077151	NES16044637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3446025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Gm64114	predicted gene, 64114			within coordinates
Rr381632	regulatory region 381632			within coordinates
Rr658904	regulatory region 658904			949 bp distal