rs47101720 SNP Detail

Summary

• ID
  rs47101720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGAAGG GACAGCTGGA
  CTCTGAACTG GGTCCCCTGT TAATTTTTCA CAGAACTGTG AACAGATTAA AGTCCCCTCA
  CAGTATAGCC TTTCCACCGT GATCCCAAAT GGTAAATTCA AACAGACACA CACTTAAAAT
  GGCCCAGCAG AGCCTCAAAA GACTCCACAT TGGCCCCAAG ACTACTGGGT CCCAGTTAGG
  R
  TTTATCCAAG TCATTTTGGG TCCCCAAATT ACTCCCTCAC ATGTATCTGT GCTGGGCCCA
  TGCTGGCTCC CAGCCACCAG CACAGAGATG GCCCACACAG GGAAACAATA GCAATGAAAG
  GGTCTTTCTG TCTCTTTGCT TAAATGGGAG GAAGCCTGTG ACATTTTCCA AGTCCTGAGG
  TGGTCCAAGT CCTGCCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543388	ENSMUSSNP1926380	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47101720					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1552 bp distal
Rr398589	regulatory region 398589	1984 bp downstream
Rr601980	regulatory region 601980	1871 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1639 bp proximal