rs47091117 SNP Detail

Summary

• ID
  rs47091117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCTGGCA AAACAAAACA AACAAAAACC AGATAGACCT
  TTGTGTTTAA AGCATTCACA GCCTGCATAG ACAGCCAATA CAAAAAGCTG GAAAATGAAA
  R
  CAGACATATA AATGACTGAA GTGTTTATAG CTAAATGGTA AAGCATTTAC CCAGCATGTC
  AGAGATACTA GGTTAAATAC CCAGCACATA AATACATAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147988478	ENSMUSSNP7137504	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47091117					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	1123 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1657 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	1600 bp distal
Rr567589	regulatory region 567589	1427 bp distal
Rr567590	regulatory region 567590	1038 bp distal
Tssr20882	transcription start site region 20882	1549 bp downstream
Tssr20883	transcription start site region 20883	1412 bp downstream
Tssr20884	transcription start site region 20884	1397 bp downstream
Tssr26895	transcription start site region 26895	1661 bp upstream
Tssr26896	transcription start site region 26896	1621 bp upstream
Tssr26897	transcription start site region 26897	1604 bp upstream
Tssr26898	transcription start site region 26898	1515 bp upstream
Tssr26899	transcription start site region 26899	1291 bp upstream