rs47088442 SNP Detail

Summary

• ID
  rs47088442
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108730343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATGGCTT AAACACTGAA AGATAGTGTT ACCAGCTCTT
  GTATTACATC TCAGGGTAAT GAAAGCATAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  K
  TGTGTGTTTA GGAGAGGGAT TCAGAGATGT AACATAGCTG CTAGAGTGTT TGCCTCGCAC
  ATAGGAGAAT CTGAGTTCTA TCTGTTGCAT AAGCAGGGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133508797	ENSMUSSNP2583233	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321893997	CHEV_6_108703376	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47088442					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108730343 () rs orientation: forward

Symbol	Name	Function Class
Rr636193	regulatory region 636193	644 bp distal
Rr636194	regulatory region 636194	523 bp proximal