rs47086841 SNP Detail

Summary

• ID
  rs47086841
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGGAAA GAAAGCGCTT
  GGAGGTAGAG CAGTGTTGAG AGGGGAGTGC AGGTGGGTTT ACTCTATCCT CCCATCGCCT
  GTTGGGGGAG GGCATACTCG GCCTTATATG GAGGTGGGTG GCAATTTTTA GGAGTATCTC
  CTTCTATGGA TTTCAGGAAA TAAACTCTGG TCCTAGTGCT TGAACAGTAA ACAGCTCTGT
  S
  ATTCTGTTGG GCCCCAGGCC ACTCTTCTAA TCTGTCTCTG TCTGCCTAAT TTAGGTGACC
  ACAACCAATA CCTGCCCCAG CCCCCCATTC CAGCCTTCCA TGCCACCTTT CTCAGCCTCT
  TCCATAAGCC TCTCATCTCA GGTTCTAGTA CCATCCTGCC CTCTCAGCCT CCCATCCCAG
  TGCCATGCTA GCCTCCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115263	ENSMUSSNP2448128	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320438740	CHEV_2_102389659	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47086841					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	264 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	510 bp upstream
Rr561703	regulatory region 561703	129 bp proximal
Rr561704	regulatory region 561704	1401 bp proximal
Tssr19094	transcription start site region 19094	543 bp upstream
Tssr19095	transcription start site region 19095	597 bp upstream
Tssr19096	transcription start site region 19096	615 bp upstream
Tssr19097	transcription start site region 19097	636 bp upstream